Is there a reason the call to wp_footer() is not made right before the closing </body> tag, as more or less outlined in the Wordpress theme development pages? In my version of Atahualpa (3.4.4, oldie, I know), the call is made in a table generating some statistics, which is a few closing tags above </body>. Would stuff break if I moved it out by hand to its 'rightful' place?

Try it and see

I tried it and it doesn't seem to be causing any major errors, so apparently moving the call around isn't dangerous. I'll leave it where it is, but I have to make a note to move it again if I upgrade Atahualpa.