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Running Atahualpa 2.53 and server has PHP 5.4.45.
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Wow are you out of date!!! I would not recommend upgrading to WP 5.0 until you fix both of those releases.
The last version of Atahualpa was 3.7.24 - I hope you had a typo and meant Atahualpa version 3.5.3 which was released back in 2010 - 8 years ago! Now granted version 3.7.24 was released in late 2015, but you are way, way behind and I wouldn't be surprised if something breaks.
same goes for PHP - that version is OLD! If you go to wordpress.org and look at the requirements you will see:
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Requirements
To run WordPress we recommend your host supports:
PHP version 7.2 or greater.
MySQL version 5.6 or greater OR MariaDB version 10.0 or greater.
HTTPS support
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They stopped doing security fix's for PHP 5.4 back in mid 2015.
So I would suggest you:
1) backup your database and all files
2) upgrade PHP and make sure everything works
3) upgrade Ataualpa and make sure everything works
4) do another backup of the DB and all files
5) upgrade to WP 5 and test everything
You have you're work cut out for you. Good luck.