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I want the white part of the menu bar at the upper right to be the same red color as the rest of it. I cant find any options in the Atahualpa options that will change this. I have tried changing every color option on there

Follow this stickied post at the top of the forum:

http://forum.bytesforall.com/showthread.php?t=7045

Therefore, try adding this into the "CSS Inserts" tab:

div#menu1 {
background: blue;
}

Replace "blue" with the color code of your red color.